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© Arne Elofsson

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WSDL API

You can submit your jobs and fetching results in command line by the WSDL API scripts below

1. Python script topcons2_wsdl.py

Usage: topcons2_wsdl.py -m submit|get [-seq SEQFILE] [-jobname NAME] [-email EMAIL]
                                      [-fix FIXFILE]
                                      [-jobid JOBID] [-outpath DIR]


Description:
    Access topcons2 web-server (http://v2.topcons.net) through WSDL service

OPTIONS:
  -m submit|get  Set the mode
                 submit - submit a job to WSDL
                 get    - retrieve the result from the server

  -seq    FILE   Supply input sequence in FASTA format

  -jobname STR   Give the job a name

  -email   STR   Send a notification to the email when the result is ready

  -jobid   STR   Retrieve the result by supplying a valid jobid

  -outpath DIR   Save the retrieved data to outpath, (default: ./)

  -fix    FILE   Supply a file with topology constraints (TO BE IMPLEMENTED)

  -h, --help     Print this help message and exit

Created 2015-02-04, updated 2015-02-06, Nanjiang Shu


Examples:
    # submit test.fa with jobname 'test' to the server 
    topcons2_wsdl.py -m submit -seq test.fa -jobname test

    # try to retrieve the result for jobid 'rst_TTT' and save it to the current
    # directory
    topcons2_wsdl.py -m get -jobid rst_TTT